Crystal structure of Thermoplasma acidophilum XerA recombinase shows large C-shape clamp conformation and cis-cleavage mode for nucleophilic tyrosine
DC Field | Value | Language |
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dc.contributor.author | Jo, Chang Hwa | - |
dc.contributor.author | Kim, Junsoo | - |
dc.contributor.author | Han, Ah-reum | - |
dc.contributor.author | Park, Sam Yong | - |
dc.contributor.author | Hwang, Kwang Yeon | - |
dc.contributor.author | Nam, Ki Hyun | - |
dc.date.accessioned | 2021-09-04T01:58:30Z | - |
dc.date.available | 2021-09-04T01:58:30Z | - |
dc.date.created | 2021-06-16 | - |
dc.date.issued | 2016-03 | - |
dc.identifier.issn | 0014-5793 | - |
dc.identifier.uri | https://scholar.korea.ac.kr/handle/2021.sw.korea/89266 | - |
dc.description.abstract | Site-specific Xer recombination plays a pivotal role in reshuffling genetic information. Here, we report the 2.5 angstrom crystal structure of XerA from the archaean Thermoplasma acidophilum. Crystallographic data reveal a uniquely open conformational state, resulting in a C-shaped clamp with an angle of similar to 48 degrees and a distance of 57 angstrom between the core-binding and the catalytic domains. The catalytic nucleophile, Tyr264, is positioned in cis-cleavage mode by XerA's C-term tail that interacts with the CAT domain of a neighboring monomer without DNA substrate. Structural comparisons of tyrosine recombinases elucidate the dynamics of Xer recombinase. | - |
dc.language | English | - |
dc.language.iso | en | - |
dc.publisher | WILEY | - |
dc.subject | SITE-SPECIFIC RECOMBINATION | - |
dc.subject | INTEGRASE FAMILY | - |
dc.subject | ACTIVE-SITE | - |
dc.subject | DNA | - |
dc.subject | CRYSTALLOGRAPHY | - |
dc.subject | CATALYSIS | - |
dc.subject | ELEMENT | - |
dc.subject | PROTEIN | - |
dc.subject | DOMAIN | - |
dc.subject | SUITE | - |
dc.title | Crystal structure of Thermoplasma acidophilum XerA recombinase shows large C-shape clamp conformation and cis-cleavage mode for nucleophilic tyrosine | - |
dc.type | Article | - |
dc.contributor.affiliatedAuthor | Hwang, Kwang Yeon | - |
dc.identifier.doi | 10.1002/1873-3468.12109 | - |
dc.identifier.scopusid | 2-s2.0-84960146242 | - |
dc.identifier.wosid | 000372586400017 | - |
dc.identifier.bibliographicCitation | FEBS LETTERS, v.590, no.6, pp.848 - 856 | - |
dc.relation.isPartOf | FEBS LETTERS | - |
dc.citation.title | FEBS LETTERS | - |
dc.citation.volume | 590 | - |
dc.citation.number | 6 | - |
dc.citation.startPage | 848 | - |
dc.citation.endPage | 856 | - |
dc.type.rims | ART | - |
dc.type.docType | Article | - |
dc.description.journalClass | 1 | - |
dc.description.journalRegisteredClass | scie | - |
dc.description.journalRegisteredClass | scopus | - |
dc.relation.journalResearchArea | Biochemistry & Molecular Biology | - |
dc.relation.journalResearchArea | Biophysics | - |
dc.relation.journalResearchArea | Cell Biology | - |
dc.relation.journalWebOfScienceCategory | Biochemistry & Molecular Biology | - |
dc.relation.journalWebOfScienceCategory | Biophysics | - |
dc.relation.journalWebOfScienceCategory | Cell Biology | - |
dc.subject.keywordPlus | SITE-SPECIFIC RECOMBINATION | - |
dc.subject.keywordPlus | INTEGRASE FAMILY | - |
dc.subject.keywordPlus | ACTIVE-SITE | - |
dc.subject.keywordPlus | DNA | - |
dc.subject.keywordPlus | CRYSTALLOGRAPHY | - |
dc.subject.keywordPlus | CATALYSIS | - |
dc.subject.keywordPlus | ELEMENT | - |
dc.subject.keywordPlus | PROTEIN | - |
dc.subject.keywordPlus | DOMAIN | - |
dc.subject.keywordPlus | SUITE | - |
dc.subject.keywordAuthor | cis-cleavage mode | - |
dc.subject.keywordAuthor | C-shape clamp | - |
dc.subject.keywordAuthor | tyrosine site-specific recombinase | - |
dc.subject.keywordAuthor | Xer recombinase | - |
dc.subject.keywordAuthor | XerA | - |
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