Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Chun, Jongsik; Oren, Aharon; Ventosa, Antonio; Christensen, Henrik; Arahal, David Ruiz; da Costa, Milton S.; Rooney, Alejandro P.; Yi, Hana; Xu, Xue-Wei; De Meyer, Sofie; Trujillo, Martha E.

doi:10.1099/ijsem.0.002516

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Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Chun, Jongsik;
Oren, Aharon;
Ventosa, Antonio;
Christensen, Henrik;
Arahal, David Ruiz;
... Yi, Hana;
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초록

Advancement of DNA sequencing technology allows the routine use of genome sequences in the various fields of microbiology. The information held in genome sequences proved to provide objective and reliable means in the taxonomy of prokaryotes. Here, we describe the minimal standards for the quality of genome sequences and how they can be applied for taxonomic purposes.

키워드

genome sequence; minimal standards; prokaryotic taxonomy; average nucleotide identity; phylogenomics; AVERAGE NUCLEOTIDE IDENTITY; RNA GENE-SEQUENCES; SPECIES DEFINITION; ALGORITHM; BACTERIA; ARCHAEA

제목: Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

저자: Chun, Jongsik; Oren, Aharon; Ventosa, Antonio; Christensen, Henrik; Arahal, David Ruiz; da Costa, Milton S.; Rooney, Alejandro P.; Yi, Hana; Xu, Xue-Wei; De Meyer, Sofie; Trujillo, Martha E.

DOI: 10.1099/ijsem.0.002516

발행일: 2018-01

유형: Article

저널명: International Journal of Systematic and Evolutionary Microbiology

권: 68

호: 1

페이지: 461 ~ 466

언어: ENG

출판사: MICROBIOLOGY SOC

발행국가: 영국

분량: 6 페이지

ISSN: E 1466-5034
P 1466-5026